I'm kinda new to Matlab so I don't exactly know how to tackle my problem. I am using bitplane Imaris and we have a volume with neurons imaged within it. What we get then is filaments and spots, which are assigned to be dendrites and terminals. The traced filaments that share same axon and such and all terminals that are on those filaments are all apart of one axon. Im trying to figure out how to calculate the path length between terminals via the branches. This gets very tedious when you have over 10 terminals on an axon. I don't know where to start to try to figure out how to classify branches and such and terminals so that it can detect which terminals and stuff and make the correct calculation.
Any advice would be greatly appreciated