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help me with a perl script

carolina12carolina12 Posts: 2Member

Dear all,

I am new to perl programming. and I need a perl script, the details of which are as follows:

I have more than 350 batch files with an extension .acc in my home directory and on my linux i used the command

./ncbi_blast-2.2.19+/bin/blastdbcmd -db ./seqcap -dbtype prot -entry_batch

with an input file and stating -out for an output file that should have the extension .fasta and also an log file.

I need an perl script that retreives all my files with an extension .acc and uses the above said command and it should give the output in the fasta format and also the log file.

if anyone has the script kindly post to me.

Thanks in advance
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